IDEAS Project Bibliography

Peer-Reviewed Publications

2016

  • S. Balay, J. Brown, M. Knepley, L. C. McInnes, and B. Smith. Providing mixed-language and legacy support within a library: experiences of developing PETSc. 2016. chapter accepted for publication in the upcoming book on {\em Software Engineering for Science}, editors J. Carver, H. C. Hong, and G. Thiruvathukal
    [BibTeX]
    @misc{BalayEtAl-mixed-language-chapter2016,
    author = "S. Balay and J. Brown and M. Knepley and L. C. McInnes and B. Smith",
    title = "Providing Mixed-Language and Legacy Support within a Library: Experiences of Developing {PETSc}",
    note = "chapter accepted for publication in the upcoming book on {\em Software Engineering for Science}, editors J. Carver, H. C. Hong, and G. Thiruvathukal",
    year = 2016
    }

  • R. Bartlett, A. Dubey, S. Li, J. D. Moulton, J. Willenbring, and U. Yang. The role of automated testing in scientific software: impacts on research credibility, development productivity, maturation, and sustainability. 2016. chapter accepted for publication in the upcoming book on {\em Software Engineering for Science}, editors J. Carver, H. C. Hong, and G. Thiruvathukal
    [BibTeX]
    @misc{BartlettEtAl-testing-chapter2016,
    author = "R. Bartlett and A. Dubey and S. Li and J. D. Moulton and J. Willenbring and U. Yang",
    title = "The Role of Automated Testing in Scientific Software: Impacts on Research Credibility, Development Productivity, Maturation, and Sustainability",
    note = "chapter accepted for publication in the upcoming book on {\em Software Engineering for Science}, editors J. Carver, H. C. Hong, and G. Thiruvathukal",
    year = 2016
    }

  • Ethan T. Coon, David J. Moulton, and Scott L. Painter. Managing complexity in simulations of land surface and near-surface processes. Environmental modelling & software, 78:134-149, 2016. doi:http://dx.doi.org/10.1016/j.envsoft.2015.12.017
    [BibTeX]
    @Article{ETCoon_JDMoulton_SLPainter_2016a,
    author = {Ethan T. Coon and J. David Moulton and Scott L. Painter},
    title = {Managing Complexity in Simulations of Land Surface and Near-surface Processes},
    journal = EnvironmentalModellingANDSoftware,
    volume = 78,
    pages = {134--149},
    year = 2016,
    doi = {http://dx.doi.org/10.1016/j.envsoft.2015.12.017}
    }

  • A. Dubey, K. Antypas, E. Coon, and K. Riley. Software process for multicomponent multiphysics codes. 2016. chapter accepted for publication in the upcoming book on {\em Software Engineering for Science}, editors J. Carver, H. C. Hong, and G. Thiruvathukal
    [BibTeX]
    @misc{DubeyEtAl-multiphysics-chapter2016,
    author = "A. Dubey and K. Antypas and E. Coon and K. Riley",
    title = "Software Process for Multicomponent Multiphysics Codes",
    note = "chapter accepted for publication in the upcoming book on {\em Software Engineering for Science}, editors J. Carver, H. C. Hong, and G. Thiruvathukal",
    year = 2016
    }

  • R. M. Maxwell, L. E. Condon, S. J. Kollet, K. Maher, R. Haggerty, and M. M. Forrester. The imprint of climate and geology on the residence times of groundwater. Geophysical research letters, 43(2):701-708, 2016. doi:http://dx.doi.org/10.1002/2015GL066916
    [BibTeX]
    @Article{RMMaxwell_etal_2016a,
    author = {R. M. Maxwell and L. E. Condon and S. J. Kollet and K. Maher
    and R. Haggerty and M. M. Forrester},
    title = {The imprint of climate and geology on the residence times of groundwater},
    journal = {Geophysical Research Letters},
    volume = 43,
    number = 2,
    pages = {701--708},
    year = 2016,
    doi = {http://dx.doi.org/10.1002/2015GL066916}
    }

  • Dali Wang, Zhou Yao, and Frank Winkler. Building a function testing platform for complex scientific computing code. 2016. chapter accepted for publication in the upcoming book on {\em Software Engineering for Science}, editors J. Carver, H. C. Hong, and G. Thiruvathukal
    [BibTeX]
    @misc{WangEtAl-testing-chapter2016,
    author = "Dali Wang and Zhou Yao and Frank Winkler",
    title = "Building a Function Testing Platform for Complex Scientific
    Computing Code",
    note = "chapter accepted for publication in the upcoming book on {\em Software Engineering for Science}, editors J. Carver, H. C. Hong, and G. Thiruvathukal",
    year = 2016
    }

  • Zhuo Yao, Yulu Jia, Dali Wang, Chad Steed, and Scott Atchley. In situ data infrastructure for scientific unit testing platform. In Proceedings of the 13$^{th}$ international workshop on multiscale modelling and simulation, in conjunction with the international conference on computational science (iccs), june 6-8, 2016, san diego, ca, 2016. in press
    [BibTeX]
    @InProceedings{Yao:2016:SDI,
    author = "Zhuo Yao and Yulu Jia and Dali Wang and Chad Steed and Scott Atchley",
    title = "In Situ Data Infrastructure for Scientific Unit Testing Platform",
    booktitle = {Proceedings of the 13$^{th}$ International Workshop
    on Multiscale Modelling and Simulation, in
    conjunction with the International Conference on
    Computational Science (ICCS), June 6-8, 2016, San
    Diego, CA},
    year = 2016,
    note = {in press}}

2015

  • L. E. Condon, A. S. Hering, and R. M. Maxwell. Quantitative assessment of groundwater controls across major us river basins using a multi-model regression algorithm.. Advances in water resources, 82:106-123, 2015. doi:http://dx.doi.org/10.1016/j.advwatres.2015.04.008
    [BibTeX]
    @Article{LECondon_ASHering_RMMaxwell_2015a,
    author = {L. E. Condon and A. S. Hering and R. M. Maxwell},
    title = {Quantitative assessment of groundwater controls across
    major US river basins using a multi-model regression
    algorithm.},
    journal = {Advances in Water Resources},
    volume = 82,
    pages = {106--123},
    year = 2015,
    doi = {http://dx.doi.org/10.1016/j.advwatres.2015.04.008}
    }

  • A. Dubey and D. Graves. A design proposal for a next generation scientific software framework. In Proceedings of heteropar’2015 workshop, vienna, austria, August 2015.
    [BibTeX]
    @inproceedings{DubeyGraves2016,
    author = "A. Dubey and D. Graves",
    title = "A Design Proposal for a Next Generation Scientific Software Framework",
    booktitle = "Proceedings of HeteroPar'2015 Workshop, Vienna, Austria",
    month = "August",
    year = "2015"
    }

  • Todd Gamblin, Matthew P. LeGendre, Michael R. Collette, Gregory L. Lee, Adam Moody, Bronis R. de Supinski, and Scott W. Futral. The Spack Package Manager: Bringing order to HPC software chaos. In Supercomputing 2015 (sc’15), Austin, Texas, November 15-20 2015. LLNL-CONF-669890
    [BibTeX] [Download PDF]
    @inproceedings{gamblin+:sc15,
    Acceptancerate = {22\%},
    Address = {Austin, Texas},
    Author = {Todd Gamblin and Matthew P. LeGendre and Michael R. Collette and Gregory L. Lee and Adam Moody and Bronis R. de Supinski and W. Scott Futral},
    Booktitle = {Supercomputing 2015 (SC'15)},
    Date-Added = {2015-06-28 22:46:34 +0000},
    Date-Modified = {2015-10-12 16:12:11 +0000},
    Month = {November 15-20},
    Note = {LLNL-CONF-669890},
    Title = {{The Spack Package Manager: Bringing order to HPC software chaos}},
    Url = {http://tgamblin.github.io/pubs/spack-sc15.pdf},
    Year = {2015}}

  • R. M. Maxwell and L. E. Condon. Evaluating the relationship between topography and groundwater using outputs from a continental scale integrated hydrology model. Water resources research, 51, 2015. doi:http://dx.doi.org/10.1002/2014WR016774
    [BibTeX]
    @Article{RMMaxwell_LECondon_2015a,
    author = {R. M. Maxwell and L. E. Condon},
    title = {Evaluating the relationship between topography and
    groundwater using outputs from a continental scale
    integrated hydrology model},
    journal = {Water Resources Research},
    volume = 51,
    year = 2015,
    doi = {http://dx.doi.org/10.1002/2014WR016774}
    }

  • T. D. Scheibe, X. Yang, X. Chen, and G. Hammond. A hybrid multiscale framework for subsurface flow and transport simulations. Procedia comput. sci., 51:1098-1107, 2015. International Conference on Computational Science, {(ICCS)} 2015 Computational Science at the Gates of Nature doi:http://dx.doi.org/10.1016/j.procs.2015.05.276
    [BibTeX] [Download PDF]
    @article{TDScheibe_etal_ICCS_2015,
    author = {T. D. Scheibe and X. Yang and X. Chen and G. Hammond},
    title = {A Hybrid Multiscale Framework for Subsurface Flow
    and Transport Simulations},
    journal = ProcediaComputerScience,
    volume = 51,
    number = 0,
    pages = {1098--1107},
    year = 2015,
    note = "International Conference on Computational Science,
    {(ICCS)} 2015 Computational Science at the Gates of Nature ",
    doi = "http://dx.doi.org/10.1016/j.procs.2015.05.276",
    url = "http://www.sciencedirect.com/science/article/pii/S1877050915010844"
    }

  • Dali Wang, Wei Wu, Tommy Janjusic, Yang Xu, Colleen Iversen, Peter Thornton, and Misha Krassovisk. Scientific functional testing platform for environmental models: an application to the Community Land Model. In International workshop on software engineering for high performance computing in science, 37th international conference on software engineering, may 16-24, 2015, florence, italy, 2015. doi:10.1109/SE4HPCS.2015.10
    [BibTeX]
    @inproceedings{WangEtAl-SEHPCS,
    author = "Dali Wang and Wei Wu and Tommy Janjusic and Yang Xu and Colleen Iversen and Peter Thornton and Misha Krassovisk",
    title = "Scientific Functional Testing Platform for Environmental Models: An Application to the {Community Land Model}",
    booktitle = "International Workshop on Software Engineering for High Performance Computing in Science, 37th International Conference on Software Engineering, May 16-24, 2015, Florence, Italy",
    doi = "10.1109/SE4HPCS.2015.10",
    year = 2015
    }

2014

  • Dali Wang, Wei Wu, Frank Winkler, Wei Ding, and Oscar Hernandez. A feasibility study on porting the community land model onto accelerators using OpenACC. International journal of advanced computer science and applications (ijacsa), 5(12), 2014. doi:http://dx.doi.org/10.14569/IJACSA.2014.051203
    [BibTeX]
    @article{WangEtAl-IJACSA14,
    author = "Dali Wang and Wei Wu and Frank Winkler and Wei Ding and Oscar Hernandez",
    title = "A Feasibility Study on Porting the Community Land Model onto Accelerators using {OpenACC}",
    journal = "International Journal of Advanced Computer Science and Applications (IJACSA)",
    volume = 5,
    number = 12,
    year = 2014,
    doi = "http://dx.doi.org/10.14569/IJACSA.2014.051203"
    }

  • V. Mahadevan, S. Colby, and M. Thomas. A review of multiscale coupling tools to improve scientific productivity. . Document in preparation
    [BibTeX]
    @misc{MahadevanEtAl-coupling-survey2016,
    author = "V. Mahadevan and S. Colby and M. Thomas",
    title = "A Review of Multiscale Coupling Tools to Improve Scientific Productivity",
    note = "Document in preparation"
    }

  • V. Mahadevan, M. Thomas, and S. Colby. A review of multiscale coupling tools to improve scientific productivity. . Abstract accepted for presentation at the 13$^{th}$ International Workshop on Multiscale Modelling and Simulation, in conjunction with the International Conference on Computational Science (ICCS), June 6-8, 2016, San Diego, CA
    [BibTeX]
    @misc{MahadevanEtAl-multiscale-iccs2016,
    author = "V. Mahadevan and M. Thomas and S. Colby",
    title = "A Review of Multiscale Coupling Tools to Improve Scientific Productivity",
    note = "Abstract accepted for presentation at the 13$^{th}$ International Workshop on Multiscale Modelling and Simulation, in conjunction with the International Conference on Computational Science (ICCS), June 6-8, 2016, San Diego, CA",
    }

Presentations

2016

  • David E. Bernholdt. Planning for change: designing large-scale software systems for emerging HPC environments. plenary talk, 56th Sanibel Symposium, St. Simons Island, Geor\ gia, USA, February 14–19 2016.
    [BibTeX]
    @Misc{sanibel:2016:planning,
    author = {David E. Bernholdt},
    title = {Planning for Change: Designing Large-Scale Software
    Systems for Emerging {HPC} Environments},
    howpublished = {plenary talk, 56th Sanibel Symposium, St. Simons Island, Geor\
    gia, USA},
    month = {February 14--19},
    year = 2016,
    }

  • David E. Bernholdt and Oscar R. Hernandez. An overview of the IDEAS software productivity project. seminar, ABB Corporate Research, Raleigh, North Carolina, May 2, 2016.
    [BibTeX]
    @Misc{abb:2016:ideas,
    author = {David E. Bernholdt and Oscar R. Hernandez},
    title = {An Overview of the {IDEAS} Software Productivity Project},
    howpublished = {seminar, ABB Corporate Research, Raleigh, North Carolina},
    month = {May 2,},
    year = 2016,
    }

  • L. E. Condon, I. E. M. de Graaf, and R. M. Maxwell. Assessing groundwater surface water interactions using an integrated hydrologic model of the continental U.S.. 2016. Poster at \ESSPIs{}
    [BibTeX]
    @Misc{ESS-poster-IDEAS-UC3-conus-2016,
    author = {L. E. Condon and I. E. M. de Graaf and R. M. Maxwell},
    title = {Assessing groundwater surface water interactions using an integrated
    hydrologic model of the Continental {U.S.}},
    year = 2016,
    note = {Poster at \ESSPIs{}}
    }

  • Dipankar Dwivedi, Carl Steefel, Erica Woodburn, David Moulton, Ethan Coon, Lauren Foster, and Reed Maxwell. Testing code interoperability and productivity on modeling integrated surface-subsurface water flow and biogeochemical cycling in the hyporheic zone — IDEAS Use Case 1. 2016. Poster at \ESSPIs{}
    [BibTeX]
    @Misc{ESS-poster-IDEAS-UC1-benchmarking-2016,
    author = {Dipankar Dwivedi and Carl Steefel and Erica Woodburn and David Moulton
    and Ethan Coon and Lauren Foster and Reed Maxwell},
    title = {Testing Code Interoperability and Productivity on Modeling
    Integrated Surface-Subsurface Water Flow and Biogeochemical
    Cycling in the Hyporheic Zone -- {IDEAS} {U}se {C}ase 1},
    year = 2016,
    note = {Poster at \ESSPIs{}}
    }

  • Michael A. Heroux, Lois Curfman McInnes, David Bernholdt, Hans Johansen, Tim Scheibe, Ulrike Yang, and the IDEAS team. Interoperable design of extreme-scale application software (IDEAS): software development metholdologies that enhance scientific productivity. 2016. Poster at \ESSPIs{}
    [BibTeX]
    @Misc{ESS-poster-IDEAS-overview-2016,
    author = {Michael A. Heroux and Lois Curfman McInnes
    and David Bernholdt and Hans Johansen
    and Tim Scheibe and Ulrike Yang and {the IDEAS team}},
    title = {Interoperable Design of Extreme-scale Application Software
    {(IDEAS)}: Software Development Metholdologies that
    Enhance Scientific Productivity},
    year = 2016,
    note = {Poster at \ESSPIs{}}
    }

  • Jeffrey Johnson, Sergi Molins, Ethan Coon, and Reed Maxwell. Interoperable software for integrated watershed scale models. 2016. Poster at \ESSPIs{}
    [BibTeX]
    @Misc{ESS-poster-IDEAS-interoperable-2016,
    author = {Jeffrey Johnson and Sergi Molins and Ethan Coon and Reed Maxwell},
    title = {Interoperable software for integrated watershed scale models},
    year = 2016,
    note = {Poster at \ESSPIs{}}
    }

  • R. M. Maxwell. Towards a high resolution, integrated hydrology model of north america: diagnosis of feedbacks between groundwater and land energy fluxes at continental scales. 2016. Invited talk at \ESSPIs{}
    [BibTeX]
    @Misc{ESS-talk-IDEAS-UC3-conus-2016,
    author = {R. M. Maxwell},
    title = {Towards a High Resolution, Integrated Hydrology Model of
    North America: Diagnosis of Feedbacks between Groundwater
    and Land Energy Fluxes at Continental Scales},
    year = 2016,
    note = {Invited talk at \ESSPIs{}}
    }

  • Lois Curfman McInnes. Interoperable design of extreme-scale application software (ideas). 2016. Invited talk at \ESSPIs{}
    [BibTeX]
    @Misc{ESS-talk-IDEAS-overview-2016,
    author = {Lois Curfman McInnes},
    title = {Interoperable Design of Extreme-scale Application Software (IDEAS)},
    year = 2016,
    note = {Invited talk at \ESSPIs{}}
    }

  • J. D. Moulton. Realizing the virtual laboratory through community supported cyberinfrastructure: leveraging ideas and beyond. 2016. Invited talk at \ESSPIs{}
    [BibTeX]
    @Misc{ESS-talk-IDEAS-working-groups-2016,
    author = {J. D. Moulton},
    title = {Realizing the Virtual Laboratory through Community
    Supported Cyberinfrastructure: Leveraging IDEAS and beyond},
    year = 2016,
    note = {Invited talk at \ESSPIs{}}
    }

  • D. Moulton, E. Coon, J. Johnson, S. Molins, G. Hammond, C. Steefel, S. Painter, M. Heroux, L. C. McInnes, H. Johansen, and D. Bernholdt. Interoperable designs and community approaches to software productivity in environmental applications. 2016. Presentation at the \CMWR{}
    [BibTeX]
    @Misc{cmwr-interoperability-2016,
    author = {D. Moulton and E. Coon and J. Johnson and S. Molins and G. Hammond
    and C. Steefel and S. Painter and M. Heroux and L. C. McInnes
    and H. Johansen and D. Bernholdt},
    title = {Interoperable Designs and Community Approaches to Software
    Productivity in Environmental Applications},
    year = 2016,
    note = {Presentation at the \CMWR{}}
    }

  • S. L. Painter and E. T. Coon. Update on IDEAS Use Case 2. 2016. Presentation at NGEE-Arctic Science Talk, April 2016
    [BibTeX]
    @Misc{ngee-science-talk-april-2016,
    author = {S. L. Painter and E. T. Coon},
    title = {Update on {IDEAS} {U}se {C}ase 2},
    year = 2016,
    note = {Presentation at NGEE-Arctic Science Talk, April 2016}
    }

  • S. L. Painter, E. T. Coon, A. Jan, and J. D. Moulton. A multiscale strategy for process-rich, microtopography-aware simulations of soil thermal hydrology in polygonal tundra.. 2016. Presentation at the Austin International Conference on Soil Modeling, March 29 — April 1, 2016, Austin, Texas
    [BibTeX]
    @Misc{ismc-multi-dimensional-2016,
    author = {S. L. Painter and E. T. Coon and A. Jan and J. D. Moulton},
    title = {A multiscale strategy for process-rich, microtopography-aware
    simulations of soil thermal hydrology in polygonal tundra.},
    year = 2016,
    note = {Presentation at the Austin International Conference on Soil Modeling,
    March 29 -- April 1, 2016, Austin, Texas}
    }

  • S. L. Painter. A multiscale strategy for process-rich, microtopography-aware simulations of thermal hydrology in polygonal tundra. 2016. Invited talk at \ESSPIs{}
    [BibTeX]
    @Misc{ESS-talk-IDEAS-UC2-multidimensional-2016,
    author = {S. L. Painter},
    title = {A Multiscale Strategy for Process-Rich, Microtopography-Aware Simulations
    of Thermal Hydrology in Polygonal Tundra},
    year = 2016,
    note = {Invited talk at \ESSPIs{}}
    }

  • S. L. Painter, E. T. Coon, A. Jan, and J. D. Moulton. A multiscale strategy for process-rich, microtopography-aware simulations of soil thermal hydrology in polygonal tundra.. 2016. Poster at \ESSPIs{}
    [BibTeX]
    @Misc{ESS-poster-IDEAS-UC2-multidimensional-2016,
    author = {S. L. Painter and E. T. Coon and A. Jan and J. D. Moulton},
    title = {A multiscale strategy for process-rich, microtopography-aware
    simulations of soil thermal hydrology in polygonal tundra.},
    year = 2016,
    note = {Poster at \ESSPIs{}}
    }

  • T. D. Scheibe, X. Yang, X. Song, G. E. Hammond, X. Chen, I. Battiato, S. Korneev, A. M. Tartakovsky, G. D. Tartakovsky, X. Yang, and J. M. Zachara.. Hybrid multiscale simulation of hydro-biogeochemical processes in the groundwater-surface water interaction zone. 2016. Poster at \ESSPIs{}
    [BibTeX]
    @Misc{ESS-poster-PNNL-SFA-multiscale-2016,
    author = {T. D. Scheibe and X. Yang and X. Song and G. E. Hammond and X. Chen
    and I. Battiato and S. Korneev and A. M. Tartakovsky
    and G. D. Tartakovsky and X. Yang and J. M. Zachara.},
    title = {Hybrid multiscale Simulation of Hydro-Biogeochemical Processes
    in the Groundwater-Surface Water Interaction Zone},
    year = 2016,
    note = {Poster at \ESSPIs{}}
    }

  • Carl Steefel. Interoperability and productivity in modeling watershed-scale integrated surface-subsurface water flow and biogeochemical cycling. 2016. Invited talk at \ESSPIs{}
    [BibTeX]
    @Misc{ESS-talk-IDEAS-UC1-benchmarking-2016,
    author = {Carl Steefel},
    title = {Interoperability and Productivity in Modeling Watershed-Scale
    Integrated Surface-Subsurface Water Flow and Biogeochemical Cycling},
    year = 2016,
    note = {Invited talk at \ESSPIs{}}
    }

  • X. Yang and T. D. Scheibe. Hybrid multiscale simulation of hydrologic-biogeochemical processes in subsurface environments. 2016. Presentation at the \CMWR{}
    [BibTeX]
    @Misc{cmwr-multiscale-2016,
    author = {X. Yang and T. D. Scheibe},
    title = {Hybrid multiscale simulation of hydrologic-biogeochemical
    processes in subsurface environments},
    year = 2016,
    note = {Presentation at the \CMWR{}}
    }

2015

  • David Bernholdt, Lois Curfman McInnes, and Hans Johansen. Software engineering tools and methodologies for community code development — what support can the IDEAS project provide?. 2015. Presentation at \ESSWorkshop{}
    [BibTeX]
    @Misc{BER-ESS-workshop-ideas-overview,
    author = {David Bernholdt and Lois Curfman McInnes and Hans Johansen},
    title = {Software Engineering Tools and Methodologies for Community Code Development -- What Support can the {IDEAS} Project Provide?},
    note = {Presentation at \ESSWorkshop{}},
    year = 2015
    }

  • David Bernholdt, Wael Elwasif, and Donald Batchelor. Software productivity appliction: integrated modeling for fusion energy. 2015. Presentation at \SIAMCSE{}
    [BibTeX]
    @misc{siam-cse15-mini-Bernholdt,
    author = "David Bernholdt and Wael Elwasif and Donald Batchelor",
    title = "Software Productivity Appliction: Integrated Modeling for Fusion Energy",
    note = "Presentation at \SIAMCSE{}",
    year = 2015
    }

  • David E. Bernholdt. Programming environment and software engineering at extreme scale. invited talk, US-Japan Joint Institute for Fusion Theory Workshop on Innovations and Co-Design of Fusion Simulations Towards Extreme Scale Computing, Nagoya, Japan, August 20–21 2015.
    [BibTeX]
    @Misc{jift:2015:progenv,
    author = {David E. Bernholdt},
    title = {Programming Environment and Software Engineering at
    Extreme Scale},
    howpublished = {invited talk, US-Japan Joint Institute for Fusion
    Theory Workshop on Innovations and Co-Design of
    Fusion Simulations Towards Extreme Scale Computing,
    Nagoya, Japan},
    month = {August 20--21},
    year = 2015,
    }

  • Jeffrey Carver and Mike Heroux. Software productivity community input: concerns and priorities. 2015. Facilitated discussion at \SIAMCSE{}
    [BibTeX]
    @misc{siam-cse15-mini-CarverHeroux,
    author = "Jeffrey Carver and Mike Heroux",
    title = "Software Productivity Community Input: Concerns and Priorities",
    note = "Facilitated discussion at \SIAMCSE{}",
    year = 2015
    }

  • Ethan Coon, David Moulton, Scott Painter, and Markus Berndt. Arcos: a coupling framework for managing complexity and enabling rapid development in ecosystem hydrology. 2015. Presentation at \SIAMGS{}
    [BibTeX]
    @Misc{siam-gs15-complexity,
    author = {Ethan Coon and David Moulton and Scott Painter
    and Markus Berndt},
    title = {Arcos: a Coupling Framework for Managing Complexity and
    Enabling Rapid Development in Ecosystem Hydrology},
    year = 2015,
    note = {Presentation at \SIAMGS{}}
    }

  • Todd Gamblin. Spack: a flexible package manager for HPC. In 13th annual workshop on charm++ and its applications, Parallel Programming Laboratory, University of Illinois, Urbana-Champaign, May 7-8, 2015.
    [BibTeX]
    @inproceedings{Gamblin:CharmWorkshop2015,
    Address = {Parallel Programming Laboratory, University of Illinois, Urbana-Champaign},
    Author = {Todd Gamblin},
    Booktitle = {13th Annual Workshop on Charm++ and its Applications},
    Date-Added = {2015-05-19 05:26:01 +0000},
    Date-Modified = {2015-05-19 05:28:07 +0000},
    Month = {May 7-8,},
    Title = {{Spack: a flexible package manager for HPC}},
    Year = {2015}}

  • Glenn E. Hammond. PFLOTRAN: recent developments facilitating massively-parallel reactive biogeochemical transport. 2015. Poster B43B-0547 at \AGUFALLf{}
    [BibTeX]
    @Misc{agu-fall15-pflotran-poster,
    author = {Glenn E. Hammond},
    title = {{PFLOTRAN}: Recent Developments Facilitating Massively-Parallel
    Reactive Biogeochemical Transport},
    year = 2015,
    note = {Poster B43B-0547 at \AGUFALLf{}}
    }

  • Michael A. Heroux, Lois Curfman McInnes, David Bernholdt, Hans Johansen, Tim Scheibe, Ulrike Yang, Ross Bartlett, Sherry Li, Barry Smith, James Willenbring, and the IDEAS team. Interoperable design of extreme-scale application software (IDEAS): software development metholdologies that enhance scientific productivity. 2015. Poster at \ESSPIf{}
    [BibTeX]
    @Misc{ESS-poster-IDEAS-overview-2015,
    author = {Michael A. Heroux and Lois Curfman McInnes
    and David Bernholdt and Hans Johansen
    and Tim Scheibe and Ulrike Yang
    and Ross Bartlett and Sherry Li
    and Barry Smith and James Willenbring
    and {the IDEAS team}},
    title = {Interoperable Design of Extreme-scale Application Software
    {(IDEAS)}: Software Development Metholdologies that
    Enhance Scientific Productivity},
    year = 2015,
    note = {Poster at \ESSPIf{}}
    }

  • Michael A. Heroux. Next generation applications: using a productivity focus. 2015. Invited presentation at 2015 OLCF Annual User Meeting, June 23-35, 2015
    [BibTeX]
    @misc{olcf15-heroux,
    title = "Next Generation Applications: Using a Productivity Focus",
    author = "Michael A. Heroux",
    note = "Invited presentation at 2015 OLCF Annual User Meeting, June 23-35, 2015",
    year = 2015
    }

  • Michael A. Heroux, Lois Curfman McInnes, David Bernholdt, Hans Johansen, Tim Scheibe, Ulrike Yang, Ross Bartlett, Sherry Li, Barry Smith, James Willenbring, and the IDEAS team. Interoperable design of extreme-scale application software (IDEAS): software development metholdologies that enhance scientific productivity. 2015. Poster at OLCF Annual Users Meeting, June 23-27, 2015
    [BibTeX]
    @Misc{OLCF-poster-IDEAS-overview-2015,
    author = {Michael A. Heroux and Lois Curfman McInnes and David Bernholdt and Hans Johansen and Tim Scheibe and Ulrike Yang and Ross Bartlett and Sherry Li and Barry Smith and James Willenbring and {the IDEAS team}},
    title = {Interoperable Design of Extreme-scale Application Software {(IDEAS)}: Software Development Metholdologies that Enhance Scientific Productivity},
    year = 2015,
    note = {Poster at OLCF Annual Users Meeting, June 23-27, 2015}
    }

  • Jeffrey N. Johnson and Sergi Molins. Alquimia: exposing mature biogeochemistry capabilities for easier benchmarking and development of next-generation subsurface codes. 2015. Poster B43B-0542 at \AGUFALLf{}
    [BibTeX]
    @Misc{agu-fall15-alquimia-poster,
    author = {Jeffrey N. Johnson and Sergi Molins},
    title = {Alquimia: Exposing mature biogeochemistry capabilities for
    easier benchmarking and development of next-generation
    subsurface codes},
    year = 2015,
    note = {Poster B43B-0542 at \AGUFALLf{}}
    }

  • Reed Maxwell, Laura Condon, Stefan Kollet, and Mary Michael Forrester. Pushing integrated hydrologic modeling towards the exascale: case studies in residence time and scaling using hyperresolution simulations over the continental U.S. and the Colorado headwaters. 2015. Presentation at \SIAMGS{}
    [BibTeX]
    @Misc{siam-gs15-conus,
    author = {Reed Maxwell and Laura Condon and Stefan Kollet
    and Mary Michael Forrester},
    title = {Pushing Integrated Hydrologic Modeling Towards the Exascale:
    Case Studies in Residence Time and Scaling Using Hyperresolution
    Simulations over the Continental {U.S.} and the {Colorado} Headwaters},
    year = 2015,
    note = {Presentation at \SIAMGS{}}
    }

  • Lois Curfman McInnes, Mike Heroux, and Hans Johansen. Software productivity challenges for extreme-scale science. 2015. Presentation at \SIAMCSE{}
    [BibTeX]
    @misc{siam-cse15-mini-McInnesHerouxJohansen,
    author = "Lois Curfman McInnes and Mike Heroux and Hans Johansen",
    title = "Software Productivity Challenges for Extreme-Scale Science",
    note = "Presentation at \SIAMCSE{}",
    year = 2015
    }

  • Sergi Molins, David Trebotich, Joe Beisman, Reed Maxwell, Ben Andre, Jeff Johnson, Marc Day, Glenn Hammond, and Carl Steefel. Interfacing the geochemical code CrunchFlow with HPC transport codes at different spatial scales: lessons and outlook. 2015. Presentation at \SIAMGS{}
    [BibTeX]
    @Misc{siam-gs15-alquimia,
    author = {Sergi Molins and David Trebotich and Joe Beisman and Reed Maxwell
    and Ben Andre and Jeff Johnson and Marc Day and Glenn Hammond
    and Carl Steefel},
    title = {Interfacing the Geochemical Code {CrunchFlow} with {HPC} Transport
    Codes at Different Spatial Scales: Lessons and Outlook},
    year = 2015,
    note = {Presentation at \SIAMGS{}}
    }

  • David Moulton, Scott Painter, Carl Steefel, Ethan Coon, Sergi Molins, Glenn Hammond, Jeff Johnson, Reed Maxwell, Tim Scheibe, Xiaofan Yang, Mike Heroux, Lois Curfman McInnes, David Bernholdt, Hans Johansen, Ulrike Meier Yang, and the IDEAS team. Community approaches to software productivity in environmental applications. 2015. Poster at MODFLOW and More 2015: Modeling a Complex World, May 31 — June 3, 2015, Colorado School of Mines, Golden, CO
    [BibTeX]
    @Misc{modflow15-ideas-overview,
    author = {David Moulton and Scott Painter and Carl Steefel and
    Ethan Coon and Sergi Molins and Glenn Hammond and
    Jeff Johnson and Reed Maxwell and Tim Scheibe and Xiaofan Yang
    and Mike Heroux and Lois Curfman McInnes and David Bernholdt
    and Hans Johansen and Ulrike Meier Yang and {the IDEAS team}},
    title = {Community Approaches to Software Productivity in Environmental Applications},
    year = 2015,
    note = {Poster at MODFLOW and More 2015: Modeling a Complex World,
    May 31 -- June 3, 2015, Colorado School of Mines, Golden, CO}
    }

  • David Moulton, Ethan Coon, Carl Steefel, Sergi Molins, and Scott Painter. Software productivity challenges in environmental applications. 2015. Presentation at \SIAMCSE{}
    [BibTeX]
    @misc{siam-cse15-mini-MoultonCoonSteefel,
    author = "David Moulton and Ethan Coon and Carl Steefel and Sergi Molins and Scott Painter",
    title = "Software Productivity Challenges in Environmental Applications",
    note = "Presentation at \SIAMCSE{}",
    year = 2015
    }

  • David Moulton. Scientific software engineering and productivity: IDEAS project overview and use cases. 2015. Presentation at \ESSWorkshop{}
    [BibTeX]
    @Misc{BER-ESS-workshop-use-cases,
    author = {David Moulton},
    title = {Scientific Software Engineering and Productivity: {IDEAS} Project Overview and Use Cases},
    note = {Presentation at \ESSWorkshop{}},
    year = 2015
    }

  • David Moulton, Carl Steefel, Scott Painter, Ethan Coon, Sergi Molins, Glenn Hammond, Reed Maxwell, Tim Scheibe, and Xiaofan Yang. Interoperable design of extreme-scale application software (IDEAS): a community approach to software productivity. 2015. Presentation at \SIAMGS{}
    [BibTeX]
    @Misc{siam-gs15-ideas-overview,
    author = {David Moulton and Carl Steefel and Scott Painter and
    Ethan Coon and Sergi Molins and Glenn Hammond and
    Reed Maxwell and Tim Scheibe and Xiaofan Yang},
    title = {Interoperable Design of Extreme-Scale Application Software
    {(IDEAS)}: A Community Approach to Software Productivity},
    year = 2015,
    note = {Presentation at \SIAMGS{}}
    }

  • David Moulton, Carl Steefel, Scott Painter, Tim Scheibe, Reed Maxwell, Ethan Coon, Glenn Hammond, and Xiaofan Yang. Environmental systems science use cases drive requirements for community-based software development. 2015. Poster at \ESSPIf{}
    [BibTeX]
    @Misc{ESS-poster-IDEAS-use-cases-2015,
    author = {David Moulton and Carl Steefel and Scott Painter
    and Tim Scheibe and Reed Maxwell and Ethan Coon
    and Glenn Hammond and Xiaofan Yang},
    title = {Environmental Systems Science Use Cases Drive Requirements
    for Community-Based Software Development},
    year = 2015,
    note = {Poster at \ESSPIf{}}
    }

  • S. L. Painter and E. T. Coon. Use case 2 of the IDEAS Project. 2015. Presentation at NGEE-Arctic All Hands Meeting, December 2015, San Francisco, CA
    [BibTeX]
    @Misc{ngee-arctic-all-hands-2015,
    author = {S. L. Painter and E. T. Coon},
    title = {Use Case 2 of the {IDEAS} {P}roject},
    year = 2015,
    note = {Presentation at NGEE-Arctic All Hands Meeting, December 2015, San Francisco, CA}
    }

  • Timothy Scheibe, Xiaofan Yang, Xingyuan Chen, and Glenn Hammond. A hybrid multiscale framework for subsurface flow and transport simulations. 2015. Presentation at the Multiscale Modelling and Simulation, 12$^{th}$ International Workshop (MSCALE) in the ICCS 2015: Computational Science at the Gates of Nature, June 1–3, 2015, Reykjavik, Iceland
    [BibTeX]
    @Misc{iccs15-multiscale,
    author = {Timothy Scheibe and Xiaofan Yang and Xingyuan Chen and Glenn Hammond},
    title = {A Hybrid Multiscale Framework for Subsurface Flow and Transport Simulations},
    year = 2015,
    note = {Presentation at the Multiscale Modelling and Simulation,
    12$^{th}$ International Workshop (MSCALE) in the ICCS 2015:
    Computational Science at the Gates of Nature, June 1--3, 2015,
    Reykjavik, Iceland}
    }

  • Dali Wang. Experience and lessons on modular ecosystem model development. 2015. Presentation at \SIAMGS{}
    [BibTeX]
    @Misc{siam-gs15-refactoring,
    author = {Dali Wang},
    title = {Experience and Lessons on Modular Ecosystem Model Development},
    year = 2015,
    note = {Presentation at \SIAMGS{}}
    }

2014

  • Organizer} William {Harrod, William Gropp Thomas Sterling {Panelists Mike Heroux Robert Wisnieski, and Satoshi Matsuoka}. HPC productivity or performance: choose one. 2014. Panel at SC14, New Orleans, LA, November 16-21, 2014
    [BibTeX]
    @misc{SC14-productivity-panel,
    title = "{HPC} Productivity or Performance: Choose One",
    author = "William {Harrod, Organizer} and {Panelists Mike Heroux, Robert Wisnieski, William Gropp, Thomas Sterling, and Satoshi Matsuoka}",
    note = "Panel at SC14, New Orleans, LA, November 16-21, 2014",
    year = 2014
    }

  • David Bernholdt. An introduction to the IDEAS software productivity project. . Presentation at the Second International Workshop on Software Engineering for High-Performance Computing in Computational Science and Engineering (SE-HPCCSE 2014), held in conjunction with SC14, November 2014
    [BibTeX]
    @misc{se-hpccse14-bernholdt,
    author = "David Bernholdt",
    title = "An Introduction to the {IDEAS} Software Productivity Project",
    note = "Presentation at the Second International Workshop on Software Engineering
    for High-Performance Computing in Computational Science and Engineering (SE-HPCCSE 2014),
    held in conjunction with SC14, November 2014",
    }

HowTo, WhatIs, and Related Guides

2016

  • Roscoe Bartlett, James M. Willenbring, Michael A. Heroux, and Todd Gamblin. How to do version control with git in your CSE project. 2016. IDEAS {\em HowTo} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-howto-version-control,
    title = {How to Do Version Control with Git in your {CSE} Project},
    author = {Roscoe Bartlett and James M. Willenbring and Michael A. Heroux and Todd Gamblin},
    note = {IDEAS {\em HowTo} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

  • Roscoe Bartlett, James M. Willenbring, and Todd Gamblin. What is version control?. 2016. IDEAS {\em WhatIs} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-whatis-version-control,
    title = {What Is Version Control?},
    author = {Roscoe Bartlett and James M. Willenbring and Todd Gamblin},
    note = {IDEAS {\em WhatIs} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

  • Anshu Dubey, Todd Gamblin, Michael A. Heroux, Irina Demeshko, and Barry Smith. What is performance portability for CSE applications?. 2016. IDEAS {\em WhatIs} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-whatis-performance-portability,
    title = {What Is Performance Portability for {CSE} Applications?},
    author = {Anshu Dubey and Todd Gamblin and Michael A. Heroux and Irina Demeshko and Barry Smith},
    note = {IDEAS {\em WhatIs} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

  • Anshu Dubey, Roscoe Bartlett, Ulrike Yang, and Ethan Coon. What is good documentation?. 2016. IDEAS {\em WhatIs} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-whatis-good-documentation,
    title = {What Is Good Documentation?},
    author = {Anshu Dubey and Roscoe Bartlett and Ulrike Yang and Ethan Coon},
    note = {IDEAS {\em WhatIs} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

  • Anshu Dubey, Roscoe Bartlett, Barry Smith, and Jeff Johnson. How to write good documentation. 2016. IDEAS {\em HowTo} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-howto-write-good-documentation,
    title = {How to Write Good Documentation},
    author = {Anshu Dubey and Roscoe Bartlett and Barry Smith and Jeff Johnson},
    note = {IDEAS {\em HowTo} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

  • Anshu Dubey, Ulrike Yang, Michael A. Heroux, Todd Gamblin, and Irina Demeshko. How to enable performance portability for CSE applications. 2016. IDEAS {\em HowTo} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-howto-performance-portability,
    title = {How to Enable Performance Portability for {CSE} Applications},
    author = {Anshu Dubey and Ulrike Yang and Michael A. Heroux and Todd Gamblin and Irina Demeshko},
    note = {IDEAS {\em HowTo} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

  • Michael A. Heroux, Hans Johansen, David Bernholdt, and Lois Curfman McInnes. What is CSE software productivity?. 2016. IDEAS {\em WhatIs} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-whatis-cse-software-productivity,
    title = {What Is {CSE} Software Productivity?},
    author = {Michael A. Heroux and Hans Johansen and David Bernholdt and Lois Curfman McInnes},
    note = {IDEAS {\em WhatIs} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

  • Lois Curfman McInnes, Michael A. Heroux, Xiaoye Li, Barry Smith, Ulrike Yang, and all xSDK developers. What are interoperable software libraries: introducing the xSDK. 2016. IDEAS {\em WhatIs} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-what-are-interoperable-libraries,
    title = {What Are Interoperable Software Libraries: Introducing the {xSDK}},
    author = {Lois Curfman McInnes and Michael A. Heroux and Xiaoye Li and Barry Smith and Ulrike Yang and {all xSDK developers}},
    note = {IDEAS {\em WhatIs} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

  • Jason Sarich, Roscoe Bartlett, Todd Gamblin, and Barry Smith. What is software configuration?. 2016. IDEAS {\em WhatIs} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-whatis-software-configuration,
    title = {What Is Software Configuration?},
    author = {Jason Sarich and Roscoe Bartlett and Todd Gamblin and Barry Smith},
    note = {IDEAS {\em WhatIs} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

  • Jason Sarich, Roscoe Bartlett, Michael A. Heroux, Barry Smith, and James M. Willenbring. How to configure software. 2016. IDEAS {\em HowTo} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-howto-configure-software,
    title = {How to Configure Software},
    author = {Jason Sarich and Roscoe Bartlett and Michael A. Heroux and Barry Smith and James M. Willenbring},
    note = {IDEAS {\em HowTo} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

  • Ulrike Yang, Roscoe Bartlett, Glenn Hammond, Xiaoye Li, Barry Smith, and James M. Willenbring. How to add and improve testing in your CSE software project. 2016. IDEAS {\em HowTo} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-howto-testing,
    title = {How to Add and Improve Testing in Your {CSE} Software Project},
    author = {Ulrike Yang and Roscoe Bartlett and Glenn Hammond and Xiaoye Li and Barry Smith and James M. Willenbring},
    note = {IDEAS {\em HowTo} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

  • Ulrike Yang, Roscoe Bartlett, Glenn Hammond, Xiaoye Li, Barry Smith, and James M. Willenbring. What are software testing practices?. 2016. IDEAS {\em WhatIs} document, version 0.2, April 25, 2016, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-whatis-testing,
    title = {What are Software Testing Practices?},
    author = {Ulrike Yang and Roscoe Bartlett and Glenn Hammond and Xiaoye Li and Barry Smith and James M. Willenbring},
    note = {IDEAS {\em WhatIs} document, version 0.2, April 25, 2016,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2016
    }

2015

  • Roscoe Bartlett, Barry Smith, James M. Willenbring, Michael A. Heroux, and Ulrike Yang. Definition and categorization of tests for CSE software. 2015. IDEAS {\em WhatIs} document, version 0.1, April 29, 2015, available via \url{https://ideas-productivity.org/resources/howtos/}
    [BibTeX]
    @misc{ideas-whatis-testing-definitions,
    title = {Definition and Categorization of Tests for {CSE} Software},
    author = {Roscoe Bartlett and Barry Smith and James M. Willenbring and Michael A. Heroux and Ulrike Yang},
    note = {IDEAS {\em WhatIs} document, version 0.1, April 29, 2015,
    available via \url{https://ideas-productivity.org/resources/howtos/}},
    year = 2015
    }

Other Artifacts

2016

  • Alicia Marie Klinvex. xSDKTrilinos user manual. Technical Report SAND2016-3396 O, Sandia, 2016.
    [BibTeX]
    @techreport{Klinvex-xSDKTrilinos,
    title = {{xSDKTrilinos} User Manual},
    author = {Alicia Marie Klinvex},
    year = 2016,
    number = {SAND2016-3396 O},
    institution = {Sandia}
    }

  • B. Smith, R. Bartlett, and the xSDK team. xSDK compliance standards. 2016. IDEAS {\em xSDK} document, version 0.2, January 2016, available via \url{https://ideas-productivity.org/resources/xsdk-docs/}, also see Appendix G of 2016 IDEAS progress report
    [BibTeX]
    @misc{xsdk-compliance,
    title = {{xSDK} Compliance Standards},
    author = {B. Smith and R. Bartlett and {the xSDK team}},
    note = {IDEAS {\em xSDK} document, version 0.2, January 2016, available via \url{https://ideas-productivity.org/resources/xsdk-docs/}, also see Appendix G of 2016 IDEAS progress report},
    year = 2016
    }

2015

  • R. Bartlett, J. Sarich, B. Smith, T. Gamblin, and the xSDK team. xSDK standard Configure and CMake options. 2015. IDEAS {\em xSDK} document, version 0.1, November 2015, available via \url{https://ideas-productivity.org/resources/xsdk-docs/}, also see Appendix H of 2016 IDEAS progress report
    [BibTeX]
    @misc{xsdk-common-configure,
    title = {{xSDK} Standard {Configure and CMake} Options},
    author = {R. Bartlett and J. Sarich and B. Smith and T. Gamblin and {the xSDK team}},
    note = {IDEAS {\em xSDK} document, version 0.1, November 2015, available via \url{https://ideas-productivity.org/resources/xsdk-docs/}, also see Appendix H of 2016 IDEAS progress report},
    year = 2015
    }

  • U.S. Department of Energy. Building cyberinfrastructure for environmental system science: modeling frameworks, data management and scientific workflows. 2015. Report on BER Workshop held April 30 — May 1, 2015, Potomac, MD
    [BibTeX] [Download PDF]
    @misc{BER-ESS-workshop-report-2015,
    author = {{U.S. Department of Energy}},
    title = {Building Cyberinfrastructure for Environmental System Science:
    Modeling Frameworks, Data Management and Scientific Workflows},
    note = {Report on BER Workshop held April 30 -- May 1, 2015, Potomac, MD},
    url = {http://www.doesbr.org/ESS-WorkingGroups/ESSWG_WorkshopReport-final.pdf},
    year = 2015
    }

  • Anshu Dubey, Lois Curfman McInnes, Philippe Canal, Daniel Elvira, Salman Habib, and Robert Roser. Enhanced software productivity for next-generation Geant science: a proposed ASCR/HEP collaboration. . whitepaper submitted to DOE in April 2016, currently under revision
    [BibTeX]
    @misc{DubeyEtAl-GeantV-whitepaper2016,
    title = "Enhanced Software Productivity for Next-Generation {Geant} Science: A Proposed {ASCR/HEP} Collaboration",
    author = "Anshu Dubey and Lois Curfman McInnes and Philippe Canal and Daniel Elvira and Salman Habib and Robert Roser",
    note = "whitepaper submitted to DOE in April 2016, currently under revision"
    }

  • L. C. McInnes, J. D. Moulton, M. Heroux, D. Bernholdt, and H. Johansen. Enhanced software productivity to deliver BER science at exascale. . whitepaper submitted to the Exascale Requirements Review for Biological and Environmental Research, Rockville, MD, March 29-30, 2016
    [BibTeX]
    @misc{McInnesEtAl-BER-exascale2016,
    author = "L. C. McInnes and J. D. Moulton and M. Heroux and D. Bernholdt and H. Johansen",
    title = "Enhanced Software Productivity to Deliver {BER} Science at Exascale",
    note = "whitepaper submitted to the Exascale Requirements Review for Biological and Environmental Research,
    Rockville, MD, March 29-30, 2016"
    }

  • Ulrich Ruede, Karen Willcox, Lois Curfman McInnes, Hans De Sterck, Omar Ghattas, David E. Keyes, and others. Future directions in CSE education and research. . Draft report led by SIAM Activity Group on Computational Science and Engineering, presented at SIAM CSE15 Conference, March 2015, currently under revision to incorporate community feedback
    [BibTeX]
    @misc{SIAM-CSE-report-draft2015,
    title = "Future Directions in {CSE} Education and Research",
    author = "Ulrich Ruede and Karen Willcox and Lois Curfman McInnes and Hans De Sterck and Omar Ghattas and David E. Keyes and others",
    note = "Draft report led by SIAM Activity Group on Computational Science and Engineering, presented at SIAM CSE15 Conference, March 2015, currently under revision to incorporate community feedback"
    }

Trainings

  • Anshu Dubey. What all codes should do: overview of best practices in HPC software development. . Presentation on May 4, 2016, Webinar Series on Best Practices for HPC Software Developers, jointly organized by ALCF, IDEAS, NERSC, and OLCF
    [BibTeX]
    @misc{Dubey-webinar2016,
    title = "What All Codes Should Do: Overview of Best Practices in {HPC} Software Development",
    author = "Anshu Dubey",
    note = "Presentation on May 4, 2016, Webinar Series on Best Practices for HPC Software Developers, jointly organized by ALCF, IDEAS, NERSC, and OLCF"
    }

  • Barry Smith. Developing, configuring, building, and deploying HPC software. . Presentation on May 18, 2016, Webinar Series on Best Practices for HPC Software Developers, jointly organized by ALCF, IDEAS, NERSC, and OLCF
    [BibTeX]
    @misc{Smith-webinar2016,
    title = "Developing, Configuring, Building, and Deploying {HPC} Software",
    author = "Barry Smith",
    note = "Presentation on May 18, 2016, Webinar Series on Best Practices for HPC Software Developers, jointly organized by ALCF, IDEAS, NERSC, and OLCF"
    }

Events Organized

2015

  • D. Dwivedi, S. Molins, C. Steefel, and D. Moulton (Co-organizers). Benchmarking next-generation reactive transport models for predicting watershed biogeochemical cycling. 2015. Poster Session B43B organized at \AGUFALLf{}
    [BibTeX]
    @Misc{agu-fall15-poster-session,
    author = {D. Dwivedi and S. Molins and C. Steefel and D. {Moulton (Co-organizers)}},
    title = {Benchmarking Next-Generation Reactive Transport Models for
    Predicting Watershed Biogeochemical Cycling},
    year = 2015,
    note = {Poster Session B43B organized at \AGUFALLf{}}
    }

  • Hans Johansen and Lois Curfman McInnes (Co-organizers). Scientific software productivity at extreme scale. 2015. Minisymposium at \SIAMCSE{}
    [BibTeX]
    @misc{siam-cse15-mini,
    author = "Hans Johansen and Lois Curfman {McInnes (Co-organizers)}",
    title = "Scientific Software Productivity at Extreme Scale",
    note = "Minisymposium at \SIAMCSE{}",
    year = 2015
    }

  • J. D. Moulton, H. M. Wainwright, T. Scheibe, and D. Lesmes. A critical gap in data management: integration workflows for models and data. 2015. Townhall TH23C at \AGUFALLf{}
    [BibTeX]
    @Misc{agu-fall15-townhall,
    author = {J. D. Moulton and H. M. Wainwright and T. Scheibe and D. Lesmes},
    title = {A critical gap in data management: integration workflows for models and data},
    year = 2015,
    note = {Townhall TH23C at \AGUFALLf{}}
    }

  • David Moulton, Carl Steefel, Tim Scheibe, and Co-Organizers} Roelof {Versteeg. Environmental system science (ESS) workshop on model-data integration: modeling frameworks, data management and scientific workflows. 2015. April 30 – May 1, 2015, Potomac, MD
    [BibTeX]
    @misc{BER-ESS-workshop-2015,
    author = {David Moulton and Carl Steefel and Tim Scheibe and Roelof {Versteeg, Co-Organizers}},
    title = {Environmental System Science {(ESS)} Workshop on Model-Data Integration:
    Modeling Frameworks, Data Management and Scientific Workflows},
    note = {April 30 - May 1, 2015, Potomac, MD},
    year = 2015
    }

  • David Moulton and Ethan Coon (Co-organizers). Interoperable designs and community approaches to software productivity. 2015. Minisymposium at \SIAMGS{}
    [BibTeX]
    @Misc{siam-gs15-mini,
    author = {David Moulton and Ethan {Coon (Co-organizers)}},
    title = {Interoperable Designs and Community Approaches to
    Software Productivity},
    year = 2015,
    note = {Minisymposium at \SIAMGS{}}
    }

  • {SIAM Conference Computational on Science and Engineering (CSE15)}. 2015. Hans De Sterck, Chris Johnson, and Lois Curfman McInnes (CSE15 Co-Chairs), March 14-18, 2015, Salt Lake City, Utah, \url{http://www.siam.org/meetings/cse15/}
    [BibTeX]
    @misc{siam-cse15,
    author = "{SIAM Conference on Computational Science and Engineering (CSE15)}",
    note = "Hans De Sterck, Chris Johnson, and Lois Curfman McInnes (CSE15 Co-Chairs),
    March 14-18, 2015, Salt Lake City, Utah, \url{http://www.siam.org/meetings/cse15/}",
    year = 2015
    }